Basic Information
VIS ID
TVIS44032599
Fusion event
HTLV-1-POT1-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
NCBI36/hg18
Start
124377283/124949993 (Hg38)
End
124377283/124949993 (Hg38)
Orient
+
Location type
Intronic
Target gene
POT1-AS1
Nearest miRNA
hsa-mir-10525/Upstream/7929674; hsa-mir-10399/Downstream/2108095;
Nearest TSS
ENST00000635602/Upstream/20010; ENST00000415715/Downstream/43015;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/19848, chr7-CpG: 237/Downstream/2301253
Upstream sequence
taccattctggacataggaacaggcaaagaattcatgatgaagacaccaaaagcaattgcaacaaaagcaaaaattgacaaatggaatctaaactaaaga
Downstream sequence
ggttctgcacagcaaaagaaactatcaacagagtaaacacacaacctacagaatgggagatttttgctaactgtgcatctgataaaggtctaatatccag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate