Basic Information
VIS ID
TVIS44032604
Fusion event
HTLV-1-SMIM13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p24.2
Reference genome
NCBI36/hg18
Start
11232581/11124362 (Hg38)
End
11232581/11124362 (Hg38)
Orient
+
Location type
Intronic
Target gene
SMIM13
miRNAs that regulate target gene
hsa-mir-16-1-3p ; hsa-mir-153-3p ; hsa-mir-487a-5p ; hsa-mir-491-3p ; hsa-mir-487b-5p ; hsa-mir-1257 ; hsa-mir-4790-3p ; hsa-mir-5002-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-548at-5p ; hsa-mir-655-5p ; hsa-mir-758-3p ; hsa-mir-3121-3p ; hsa-mir-3145-3p ; hsa-mir-6830-5p ; hsa-mir-501-3p ; hsa-mir-502-3p ; hsa-mir-767-5p ; hsa-mir-3924 ; hsa-mir-561-5p ; hsa-mir-33a-3p ; hsa-mir-6083 ; hsa-mir-5007-3p ; hsa-mir-510-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-7855-5p ; hsa-mir-205-5p ; hsa-mir-586 ; hsa-mir-3160-5p ; hsa-mir-494-3p ; hsa-mir-2053 ; hsa-mir-4999-3p ; hsa-mir-34c-3p ; hsa-mir-2113 ; hsa-mir-5010-3p ; hsa-mir-8070
Nearest miRNA
hsa-mir-3691/Upstream/684568; hsa-mir-10398/Downstream/5017194;
Nearest TSS
ENST00000381078/Upstream/12630; ENST00000500636/Downstream/49090;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/29928, chr6-CpG: 182/Downstream/412942
Upstream sequence
gtgcttggcttattttatttaacatcctccagtttcatccatgttattgcaagtgacaggatctcattcttttctttggctgaataggattccattgtgt
Downstream sequence
gtatgtaccacatttttaaaatccatttgtctgttgatggacacctaggttgcttccaaatcttgactattgtgaatagtactgcagtaaacatgggaat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate