VISDB Viral Integration Site DataBase

VIS ID

TVIS44032621

Fusion event

HTLV-1-WBP2 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

71359477/75851801 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-19b-3p ; hsa-mir-744-5p ; hsa-mir-455-3p ; hsa-mir-423-5p ; hsa-mir-324-5p ; hsa-mir-361-5p ; hsa-mir-8066 ; hsa-mir-6716-5p ; hsa-mir-2467-3p ; hsa-mir-4468 ; hsa-mir-4530 ; hsa-mir-922 ; hsa-mir-6873-5p ; hsa-mir-6510-5p ; hsa-mir-634 ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-4433b-5p ; hsa-mir-6515-5p ; hsa-mir-449c-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-188-3p ; hsa-mir-4433a-5p ; hsa-mir-6878-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-8086 ; hsa-mir-18b-3p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-4490 ; hsa-mir-4254 ; hsa-mir-6834-3p ; hsa-mir-3146 ; hsa-mir-6760-5p ; hsa-mir-619-3p ; hsa-mir-513b-3p ; hsa-mir-19a-3p ; hsa-mir-1184 ; hsa-mir-1252-5p ; hsa-mir-1301-3p ; hsa-mir-185-3p ; hsa-mir-1908-5p ; hsa-mir-2114-5p ; hsa-mir-3202 ; hsa-mir-3689d ; hsa-mir-4435 ; hsa-mir-4436a ; hsa-mir-4476 ; hsa-mir-4533 ; hsa-mir-4660 ; hsa-mir-4747-5p ; hsa-mir-5000-3p ; hsa-mir-5047 ; hsa-mir-5196-5p ; hsa-mir-6134 ; hsa-mir-663a ; hsa-mir-6787-5p ; hsa-mir-6815-5p ; hsa-mir-6829-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6851-5p ; hsa-mir-6865-5p ; hsa-mir-6876-5p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-7515 ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-7847-3p ; hsa-mir-9500

Nearest miRNA

hsa-mir-10226/Upstream/67194; hsa-mir-1250/Downstream/246218;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/66574, chr17-CpG: 78/Downstream/3378

Upstream sequence

TCAATGAGACAGTATGGAGACGCGACGTCACCCAGACACTGGGCCTTTCTCCCAAGCAGCTGCCCGGCACGTCAGCTCTCATAACCTCTCAATAGTGCGG

Downstream sequence

CATTAAAACTATTCATAGggctgggcgcggtggctcacgcccgtaatcccagcactttgggaggccgaggcgagcggatgacccctggtcaggagtttga