Basic Information
VIS ID
TVIS44032622
Fusion event
HTLV-1-LOC107984559 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
NCBI36/hg18
Start
48337223/48865086 (Hg38)
End
48337223/48865086 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984559
Nearest miRNA
hsa-mir-2276/Upstream/4668886; hsa-mir-1267/Downstream/1131329;
Nearest TSS
ENST00000623511/Upstream/158531; ENST00000378383/Downstream/110826;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/331759, chr13-CpG: 132/Downstream/110600
Upstream sequence
gtaagaaagaagaaagtggcctgaacgaggccttagtcattagggagttagcagtggacgtggtatgaagtgatcagattctgaacatattttgaagttg
Downstream sequence
gggccaatagtatttgctaaaaaatcagatgtaaggtatgagaataaaataagagtgaaggataactcagaggctttgggcctgagcaacaggaaaaatg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate