Basic Information
VIS ID
TVIS44032637
Fusion event
HTLV-1-DNAH11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
NCBI36/hg18
Start
21564538/21558395 (Hg38)
End
21564538/21558395 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNAH11
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-mir-1183/Upstream/87249; hsa-mir-10399/Downstream/4391524;
Nearest TSS
ENST00000635602/Upstream/14949; ENST00000483691/Downstream/1320;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14700, chr7-CpG: 85/Downstream/387058
Upstream sequence
CATTGATGTTTCCCGTTTCATGGTAGAAGGAGTTCTGAATAAGGTCCATGTGGCTGAATAAACATCTTTCTGACTACCCAAACTTTAATCCTCTGGGATG
Downstream sequence
CCACCTAGGGCTTGAGAAGATTAATTTACTTCTAGCTTCCATATGATTCAGAAAGATTGTTTTCATTAATGTGCCTGCCAGTGTGCTCAGTTTGCATCAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate