Basic Information
VIS ID
TVIS44032639
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
NCBI36/hg18
Start
115888537/115544393 (Hg38)
End
115888537/115544393 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/2662264; hsa-mir-1182/Downstream/1015631;
Nearest TSS
ENST00000473358/Upstream/206157; ENST00000478369/Downstream/97560;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/205682, chr1-CpG: 88/Downstream/97701
Nearby gene
LOC112268287(-2697) ;
Upstream sequence
gaatggtgggaaggaggcacaagggtgaggtttctgtttggaatgataaaaacgttgtagaagtagatagtagtgttggttgcacaacataatgaggaca
Downstream sequence
ctagaaatcactgaagtggatactttaaaatggtgattttcagccaggcatggtggcttacgcctggaatcccaacactttgggagggtgaggtgggcgg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate