Basic Information
VIS ID
TVIS44032643
Fusion event
HTLV-1-LOC107986561 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p25.1
Reference genome
NCBI36/hg18
Start
4412296/4467063 (Hg38)
End
4412296/4467063 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6B
Target gene
LOC107986561
Nearest miRNA
hsa-mir-4645/Upstream/1612956; hsa-mir-10398/Downstream/681170;
Nearest TSS
ENST00000381078/Upstream/120026; ENST00000563079/Downstream/24744;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/184987, chr6-CpG: 179/Downstream/307834
Upstream sequence
gaccaccaggtggcccattattcaagacagtcattgagactagacagactgaccagcatgtattcagctcttgtacataattcccccagactccccctcg
Downstream sequence
cataacacccctggccagcctgagaaattcgagatggtctttgtgacactagcccaccatctcctcaggttgccagctcctcataaacctacttctcctc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate