VISDB Viral Integration Site DataBase

VIS ID

TVIS44032656

Fusion event

HTLV-1-CPM integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

67589083/68909036 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3202 ; hsa-mir-9500 ; hsa-mir-3179 ; hsa-mir-2392 ; hsa-mir-6807-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-5002-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-7977 ; hsa-mir-7106-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-383-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-2909 ; hsa-mir-4668-5p ; hsa-mir-1296-5p ; hsa-mir-1258 ; hsa-mir-3152-3p ; hsa-mir-4694-5p ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-3141 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-3190-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-146a-5p ; hsa-mir-1247-3p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-2467-3p ; hsa-mir-302f ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4329 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6516-5p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6884-5p

Nearest miRNA

hsa-let-7i/Upstream/2657879; hsa-mir-1178/Downstream/364121;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/100153, chr12-CpG: 95/Downstream/23870

Upstream sequence

GAGTTTAACAGAAGTTCCACAGGGGCAGGGGTTTGTGTTTGTTCATCTGGGGCAGTACCTCAATGTTTATCTAATGTTGAATTAATGTGAAAACATGTTC

Downstream sequence

ATTCTGATTTTCAATCATGTAAATGCTACTAATTATTAAGTAgagataggttctcgctctgtcacccaggctatagttcagtggtgggaccatggccctg