Basic Information
VIS ID
TVIS44032671
Fusion event
HTLV-1-ASIC2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q12
Reference genome
NCBI36/hg18
Start
29505263/34154131 (Hg38)
End
29505263/34154131 (Hg38)
Orient
-
Location type
Intronic
Target gene
ASIC2
Nearest miRNA
hsa-mir-1180/Upstream/1803929; hsa-mir-10226/Downstream/2879614;
Nearest TSS
ENST00000595228/Upstream/11184; ENST00000583224/Downstream/1435;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/113744, chr17-CpG: 260/Downstream/424815
Upstream sequence
GCCACCAGTTGGACATGCAGTCAGGAGGAAGCTAGAGAACTCAACCCAGAGTCTGCTACTTATTACAGTTTCTCTCTGTGTCACCCTCTGTGTCGTCTGT
Downstream sequence
GTGTTCCATGTGTGTTCAGGCAGACAGAGGAACAGCTGAGTGCATTTCCAAGCTGCACGGTGCAGTGGTGAAGCCGAGCGTTGCCAGGCGCTAGAAAGAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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