Basic Information
VIS ID
TVIS44032685
Fusion event
HTLV-1-SPRY4-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
NCBI36/hg18
Start
141745240/142385491 (Hg38)
End
141745240/142385491 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPRY4-AS1
Nearest miRNA
hsa-mir-10397/Upstream/1737565; hsa-mir-103a-1/Downstream/1294369;
Nearest TSS
ENST00000502646/Upstream/31948; ENST00000425963/Downstream/18710;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/28076, chr5-CpG: 145/Downstream/384543
Upstream sequence
TGATGACTAGAGCTCCCATCCGTAGGAGAGGGAGGCCCTGTGGTCACAGTGTCACATTCCTTTTCAGTCCAGCATAAGCACTTTCACATTGTTTTTTCCC
Downstream sequence
TCCGTGATTCAAATGACAAGAACTCTTCATCTTTAGGGATCacagtataagacagtgaataagttcatgagccttggtgttatcctgcctggattgggat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate