Basic Information
VIS ID
TVIS44032719
Fusion event
HTLV-1-TFAP2D integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
50801435/50725763 (Hg38)
End
50801435/50725763 (Hg38)
Orient
+
Location type
Intronic
Target gene
TFAP2D
Nearest miRNA
hsa-mir-10398/Upstream/5527993; hsa-mir-10524/Downstream/1418586;
Nearest TSS
ENST00000381078/Upstream/7721; ENST00000489228/Downstream/92960;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1101, chr6-CpG: 68/Downstream/93810
Upstream sequence
ATTCTTCTTTGAGATCTCATCATTACCATCTGTAGTCTGGATTATCTTAAAGAAGTATCACTCCCTCAGCACCTTCAATCTAAAGGCAAAACCCTGGTGA
Downstream sequence
TATTGACCTACTACTTTTTTCCACCTCTCTAAAGAATAAATCACCAAGAAGAAAGATATCAGGTTCCCCAAGTTGCTGTAAACTCTACAAGTTGCCAAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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