Basic Information
VIS ID
TVIS44032789
Fusion event
HTLV-1-TET2-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
NCBI36/hg18
Start
106446784/105306178 (Hg38)
End
106446784/105306178 (Hg38)
Orient
+
Location type
Intronic
Target gene
TET2-AS1
Nearest miRNA
hsa-mir-12113/Upstream/3975764; hsa-mir-1243/Downstream/4182520;
Nearest TSS
ENST00000502981/Upstream/128115; ENST00000265154/Downstream/93458;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/159367, chr4-CpG: 82/Downstream/167216
Upstream sequence
GGGCCCCGTTAATAAATGGCTAAGATACACTGCCTACCATTTCTCTGTTCCACAGAAAGGGGTCTGGGTCAGTGAGAAAGAGAGTGGGAAGGAAAAGTCA
Downstream sequence
AAAACATCCTCAGTTCCAATGACACAGCTTAGGATGGTGAGTATATGTCACATACACATTAAAACCCCCCTAATTAGGTTGTCCACTTCTGACTCGGAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate