Basic Information
VIS ID
TVIS44032823
Fusion event
HTLV-1-FAM167A-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
NCBI36/hg18
Start
11283763/11388844 (Hg38)
End
11283763/11388844 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM167A-AS1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/353542; hsa-mir-10400/Downstream/1330288;
Nearest TSS
ENST00000518652/Upstream/20442; ENST00000529305/Downstream/1580;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/40664, chr8-CpG: 94/Downstream/77426
Upstream sequence
TGGGCCCGGGAAGCTGGCAGCCATTCTCAGGAAGGGGGTCGAATGCCATGTTATCACCGGGCTGGCAGTTGTGTAGCCTTCGCCGGGACGGGCCCCTTTG
Downstream sequence
GCTTGTTCTCCTTATCTTCTCTCCTCTCAAGGCCCTGCAGTGGTTATTGAGGGCAGCGGATCCAAGGGCATAATCTCCCTCCTGCCTCAGGCTCCCTGAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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