Basic Information
VIS ID
TVIS44032825
Fusion event
HTLV-1-LINC02541 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
NCBI36/hg18
Start
114053643/113625748 (Hg38)
End
114053643/113625748 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LINC02541
Nearest miRNA
hsa-mir-10398/Upstream/6841528; hsa-mir-1202/Downstream/5443299;
Nearest TSS
ENST00000381078/Upstream/94630; ENST00000612661/Downstream/6766;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1258220, chr6-CpG: 205/Downstream/232810
Upstream sequence
CTTTGGGAGCCTCAGCGAACAACATATGGATTAGAGAAATGGGTTAGTCTGTCTCCTGGCCTCTCTTCTAGGAGAGAAGACAATCTGCTATAGAAGTACC
Downstream sequence
AAATATGAAGGTTTCACATCTACTTCGCATCTTTTTGAGTTGCTTTTAGCAGCAACCTGGAAAGCTCCTTCACTTATGCCCAATACTGCAAAATGTTGGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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