Basic Information
VIS ID
TVIS44032848
Fusion event
HTLV-1-CEP295 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
NCBI36/hg18
Start
93052000/93679186 (Hg38)
End
93052000/93679186 (Hg38)
Orient
+
Location type
Intronic
Target gene
CEP295
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-10392/Upstream/2809984; hsa-let-7a-2/Downstream/54488;
Nearest TSS
ENST00000527297/Upstream/17547; ENST00000531622/Downstream/12495;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/17079, chr11-CpG: 83/Downstream/61733
Upstream sequence
cccacctcggcctcccaaagtgctggaattacaggcatgcgccaccacgcccagcAAGAGATTTCTTTGCTTACAAAGTGATGGATAAATGTGTTTGGAG
Downstream sequence
GAGTATAACCTCATCTGGTTTAAAATGAGTAACTCGTAAAGCTTTATACTAACAATTTGATCCCTTTCATAGGTACATGCCGTTGATAATTGTGGACATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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