Basic Information
VIS ID
TVIS44032860
Fusion event
HTLV-1-AGBL1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
84545630/86201395 (Hg38)
End
84545630/86201395 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGBL1
Nearest miRNA
hsa-mir-10393/Upstream/375665; hsa-mir-11181/Downstream/1744811;
Nearest TSS
ENST00000557528/Upstream/57673; ENST00000568785/Downstream/61230;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/360511, chr15-CpG: 36/Downstream/2054028
Upstream sequence
TGTACCCTTAAGAAGAAAAAGAAGTTTCTTGCAGTTTCATATTTAGGAAGGCAACCTTGGGTAGGATGTTGATTACAGATATCATTTGACTATCATTCTT
Downstream sequence
GTCTTTTAATCTAGATATAGCAAGCACAGTGTCCTGAAGCCATGTCTGAGACATTTGAAGGCAGAGTAGGAGCTATCTTGAATAGAAAATGCCTTTCAGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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