Basic Information
VIS ID
TVIS44032877
Fusion event
HTLV-1-SPAG17 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
NCBI36/hg18
Start
118474225/118130079 (Hg38)
End
118474225/118130079 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPAG17
Nearest miRNA
hsa-mir-101-1/Upstream/1035351; hsa-mir-1182/Downstream/27720508;
Nearest TSS
ENST00000473358/Upstream/42917; ENST00000423984/Downstream/55144;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/199982, chr1-CpG: 23/Downstream/55114
Upstream sequence
CCACAATTATCAAAAAGTTGTAGTGTTTCTCCAGCTTGATGTGGATGATGTTCTAGGCTGTTGTTAATTTCTAAGTATTAATCTGAATGAAATCTGCTTA
Downstream sequence
TAAAAGGGCTTATTCCTTGAATTTCCTTGTCCTCCCCCTTAATCTCTTTGACTTGTTAGTTAGCTCTAGGAGGCATACAGGGTATGTCTCCTGGCTGACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate