Basic Information
VIS ID
TVIS44032887
Fusion event
HTLV-1-LOC101927439 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
NCBI36/hg18
Start
83374050/83242209 (Hg38)
End
83374050/83242209 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927439
Nearest miRNA
hsa-let-7g/Upstream/3734240; hsa-mir-12124/Downstream/2143501;
Nearest TSS
ENST00000440867/Upstream/1256057; ENST00000488348/Downstream/1627366;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/434116, chr3-CpG: 48/Downstream/1716924
Upstream sequence
ACAGGTGTTTTATTTATTTTCCTTAAATAGGTTAATACAGACAGAGttttcatattgggtgtctttgtttacctgaattaagctattcttggttattatg
Downstream sequence
ttttaaacatcttactgcagagctcaatttatttgttaacatgttatttcaggagattttaaaatattttaagtgaaattaatgtacctatttcttataa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate