Basic Information
VIS ID
TVIS44032900
Fusion event
HTLV-1-LOC105377488 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
NCBI36/hg18
Start
152982228/151841626 (Hg38)
End
152982228/151841626 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377488
Nearest miRNA
hsa-mir-12113/Upstream/4058958; hsa-mir-1305/Downstream/647701;
Nearest TSS
ENST00000502981/Upstream/42126; ENST00000507949/Downstream/49637;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/80487, chr4-CpG: 144/Downstream/693330
Upstream sequence
ATGAATGGAGTTTATTGATCACTGTTTCCATCACCTTTCTTTCTCCTGCCACAGCCTCCTGTGCAGCATCCCCACAGCAGCCTGTGTCACTCCCTCTCCC
Downstream sequence
CACTGCAGCCCAGCATGAGCAAGGAGCCAGGTTTGCAGTGGCCATGGCAGAAGGCAAACATACTCCTACACTCCTCTTAGAGGGAACCAGTGGAGGAGAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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