Basic Information
VIS ID
TVIS44033001
Fusion event
HTLV-1-EXT1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q24.11
Reference genome
NCBI36/hg18
Start
118953194/117871774 (Hg38)
End
118953194/117871774 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
EXT1
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6077 ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-646 ; hsa-mir-2278 ; hsa-mir-510-3p ; hsa-mir-513b-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-6124 ; hsa-mir-4668-5p ; hsa-mir-134-3p ; hsa-mir-7114-5p ; hsa-mir-5003-5p ; hsa-mir-654-3p ; hsa-mir-6074 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-203a-3p ; hsa-mir-186-5p ; hsa-mir-3133
Nearest miRNA
hsa-mir-12123/Upstream/996974; hsa-mir-10400/Downstream/1453397;
Nearest TSS
ENST00000518652/Upstream/341410; ENST00000366457/Downstream/238640;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/350702, chr8-CpG: 76/Downstream/239961
Nearest cancer related gene
EXT1(TSG, No orient, 0)
Upstream sequence
TCAGGTTAGGTTGTGTGTGCTTCAGTAAGGTACTGCTAAATGCACTGGTGAGACAGAGGGGTCATCAGGCACTCTGAGGCTTGTCTTCTAAAACTGCTTC
Downstream sequence
CACAGTATCCCCTAGGGTAGGGCTGGGGTGGGCACGGTTGCCTGGGGCCAAGGAATTGGAGAAAAAATAAGCCAgctcagtggctcatggctgtaatcct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate