Basic Information
VIS ID
TVIS44033024
Fusion event
HTLV-1-ADAM32 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p11.22
Reference genome
NCBI36/hg18
Start
39203180/39226504 (Hg38)
End
39203180/39226504 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAM32
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/9269156; hsa-mir-10400/Downstream/2044544;
Nearest TSS
ENST00000518652/Upstream/5569; ENST00000517416/Downstream/44371;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/118600, chr8-CpG: 30/Downstream/296202
Upstream sequence
caggtttaatccaaagaagattataccaagctcaaaattcttcagtcaggtttaatttgaacaagactacaccaagacatattataataaaaccgtcaat
Downstream sequence
aaatataatgacattttgaaagaagcaagagaaaaaaaaagattaagtaacataatccaacatgtaagttggattttctcagcagatactttgtcagtga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate