Basic Information
VIS ID
TVIS44033030
Fusion event
HTLV-1-CNTN1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
NCBI36/hg18
Start
39550717/40870648 (Hg38)
End
39550717/40870648 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTN1
Nearest miRNA
hsa-mir-1244-3/Upstream/14996569; hsa-let-7i/Downstream/1453052;
Nearest TSS
ENST00000382841/Upstream/42464; ENST00000550305/Downstream/37706;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/177348, chr12-CpG: 91/Downstream/317705
Upstream sequence
CATTTCTGGCAGTCCTGGGCAGCACTTTCTGGAGGGAAATCAATAAATCAAATTTTAATCAGTATTTATTGAGCACCTGCTAACATAGATGCTATGGTAG
Downstream sequence
GGAAAGGTTATGGGTGAAGGAATGACAGAGGTTTATGAGATATTGTTGCTGATCTAAAGAAATTTTTATGCAGAATAGATGCACATAAGacacatgcacg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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