Basic Information
VIS ID
TVIS44033039
Fusion event
HTLV-1-PRIM2B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
57550640/60474934 (Hg38)
End
57550640/60474934 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRIM2B
Nearest miRNA
hsa-mir-10398/Upstream/3084722; hsa-mir-10524/Downstream/10902026;
Nearest TSS
ENST00000381078/Upstream/2436468; ENST00000622616/Downstream/248214;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2513384, chr6-CpG: 45/Downstream/1811016
Upstream sequence
CTTTTAAAAATTATTAGGTTGTAGAATTGGGAAAAAATGCAATTTGTCTTATCTTTTTCTATTAGCATGTTTCCAGTGTACAGTTCATTCAAAGGGTGGT
Downstream sequence
TAGTGTGGCAAAACAAATTCAGTTTCTTAATGATAAATCACAGTGAAGTACAGAAGTAAACAGATAACCTGAAGCCAGACAATGAAGTTTACATAGCCCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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