Basic Information
VIS ID
TVIS44033049
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
NCBI36/hg18
Start
35412340/35174152 (Hg38)
End
35412340/35174152 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12136/Upstream/504458; hsa-mir-101-1/Downstream/1987411;
Nearest TSS
ENST00000473358/Upstream/27717; ENST00000441447/Downstream/3509;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/53162, chr1-CpG: 98/Downstream/17714
Nearby gene
SFPQ(+2226) ;
Nearest cancer related gene
SFPQ(OG, +2226) ;
Upstream sequence
TGCAGCAATTCTTGTACTTAATTCTACTTATCATTTGAGGTTAAGTACACTGGCAACAGATGGCCTCTCCTTGGGACTTCCATCCCTTTCAGTACTTAGG
Downstream sequence
CTCTTTCTAATTGTTCCCTATGGACTACATGATCTGCAAGTTAAATTTTCTCCCTGCTATCAAAAAACTGCTAATCAGGCTCTTCTGATTACATGGTATA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate