Basic Information
VIS ID
TVIS44033053
Fusion event
HTLV-1-LOC105371654 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
184427471/186191716 (Hg38)
End
184427471/186191716 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371654
Nearest miRNA
hsa-mir-101-1/Upstream/5753326; hsa-mir-1182/Downstream/6524612;
Nearest TSS
ENST00000473358/Upstream/14414; ENST00000533951/Downstream/104563;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/874482, chr1-CpG: 69/Downstream/183276
Upstream sequence
ACTGAACACTTGGGGAAATGCTGATGTAATACAGTCAAGACGTCTGCTTCATGCCTAAATCCTTAGAAAGGACATTTTTATAACTAAGTACTTTGGTAAA
Downstream sequence
CAACTCCAACACCTGACCCTGATCATTGAGCTTCTTTCTAAAATTAAACCACATTAGTTTTGCTCATTTCCTCTGTGCAATATTCTACAAGCATAGAAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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