Basic Information
VIS ID
TVIS44033061
Fusion event
HTLV-1-LOC105370476 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
45082600/45543647 (Hg38)
End
45082600/45543647 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370476
Nearest miRNA
hsa-mir-208a/Upstream/8591256; hsa-mir-1185-1/Downstream/2217348;
Nearest TSS
ENST00000550708/Upstream/166379; ENST00000554319/Downstream/24348;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/290048, chr14-CpG: 30/Downstream/1108018
Upstream sequence
atgattgtgtttccaaatttataaagaaaatttgtcactaggaattgacaaaactgtaagtcaattaaatatcctttctttataaattacccagtcctgg
Downstream sequence
atagtgtctttatagcagtgtgagaatgaactaatacagtaaattggcactgaggtagtgggcactgctatgaagatacttgaaaatgttaagaaaatgt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate