Basic Information
VIS ID
TVIS44033078
Fusion event
HTLV-1-CST13P integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
NCBI36/hg18
Start
23452271/23523634 (Hg38)
End
23452271/23523634 (Hg38)
Orient
+
Location type
Intronic
Target gene
CST13P
Nearest miRNA
hsa-mir-103a-2/Upstream/5052943; hsa-mir-1-1/Downstream/2684552;
Nearest TSS
ENST00000382410/Upstream/4580; ENST00000437012/Downstream/45115;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/101977, chr20-CpG: 87/Downstream/113635
Upstream sequence
ctctgatggcaaaagctgaagtagagtcaccaaaaccctcactgtgcatcctccacatgtcaggcaaaaccagtccagagatggtggccagttttcaaga
Downstream sequence
aaggatgccttgtgaagctggtgagctgtcacatcaaaatgcaaagagggaagagggactctggtcttggcctcagatgattgactaatggccataaaag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate