Basic Information
VIS ID
TVIS44033087
Fusion event
HTLV-1-OSTF1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
End
76951373/75146637 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-2/Upstream/4336553; hsa-let-7a-1/Downstream/8823111;
Upstream sequence
AGCAGAGAAAGATCCTCAGGGAAAGTACAATCCCTGGGTCAGATGGAAGATTCTATTCTAATTTAAGAGCTTTGAAAATGAAAAAATAAAATCTGAGCAG
Downstream sequence
TTTATAATTTCCCTATTTTGCTTTTTTCCCTCCTCTTTCTTTCAGATGCAGTTCGAACATTAAGCAATGCCGAGGACTATCTCGATGATGAAGACTCAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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