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TVIS44033087
Basic Information
VIS ID
TVIS44033087
Fusion event
HTLV-1-OSTF1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
NCBI36/hg18
Start
76951373/75146637 (Hg38)
End
76951373/75146637 (Hg38)
Orient
+
Location type
Intronic
Target gene
OSTF1
miRNAs that regulate target gene
hsa-mir-429
;
hsa-mir-1-3p
;
hsa-mir-26b-5p
;
hsa-mir-4735-5p
;
hsa-mir-4668-3p
;
hsa-mir-548c-3p
;
hsa-mir-6844
;
hsa-mir-378a-5p
;
hsa-mir-6821-3p
;
hsa-mir-6749-3p
;
hsa-mir-6790-3p
;
hsa-mir-3653-5p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-7108-3p
;
hsa-mir-4258
;
hsa-mir-3934-5p
;
hsa-mir-764
;
hsa-mir-125a-3p
;
hsa-mir-6848-3p
;
hsa-mir-6843-3p
;
hsa-mir-3187-3p
;
hsa-mir-4435
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-548s
;
hsa-mir-6131
;
hsa-mir-4755-3p
;
hsa-mir-3663-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-1273f
;
hsa-mir-1289
;
hsa-mir-129-5p
;
hsa-mir-136-5p
;
hsa-mir-143-3p
;
hsa-mir-3120-5p
;
hsa-mir-3198
;
hsa-mir-325
;
hsa-mir-3685
;
hsa-mir-384
;
hsa-mir-411-5p
;
hsa-mir-4294
;
hsa-mir-4309
;
hsa-mir-4317
;
hsa-mir-4534
;
hsa-mir-4708-5p
;
hsa-mir-4770
;
hsa-mir-5571-3p
;
hsa-mir-6088
;
hsa-mir-6514-5p
;
hsa-mir-6832-5p
;
hsa-mir-6888-3p
;
hsa-mir-7975
;
hsa-mir-8055
;
hsa-mir-8082
Nearest miRNA
hsa-mir-101-2/Upstream/4336553; hsa-let-7a-1/Downstream/8823111;
Nearest TSS
ENST00000422679/Upstream/58094;
ENST00000455583/Downstream/433032;
Nearest CpG islands
None/Target,
chr9-CpG: 64/Upstream/57734
,
chr9-CpG: 148/Downstream/743677
Upstream sequence
AGCAGAGAAAGATCCTCAGGGAAAGTACAATCCCTGGGTCAGATGGAAGATTCTATTCTAATTTAAGAGCTTTGAAAATGAAAAAATAAAATCTGAGCAG
Downstream sequence
TTTATAATTTCCCTATTTTGCTTTTTTCCCTCCTCTTTCTTTCAGATGCAGTTCGAACATTAAGCAATGCCGAGGACTATCTCGATGATGAAGACTCAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Mono21
Sample type
Nontumor
Age
46
Gender
Male
CpG Island Information
×
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