Basic Information
VIS ID
TVIS44033122
Fusion event
HTLV-1-ETFA integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
End
74329189/76249793 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10393/Upstream/487478; hsa-mir-11181/Downstream/2959995;
Upstream sequence
gcctcccaaagtgctgggattacaggtgtgagccaccatgcccggcccagtaatcattttaaaatatatagttctgggacactaagtacagttaccttgt
Downstream sequence
tatgcaaccatcaccacccatcttcagaactACCGCCTATCTCAAGAACTGCAAAAGTTTTTTTAAAACTGTAAATAAGCAAAGTTCAGAGAGCTGTTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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