Basic Information
VIS ID
TVIS44033129
Fusion event
HTLV-1-BIVM integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
NCBI36/hg18
Start
102252233/102801882 (Hg38)
End
102252233/102801882 (Hg38)
Orient
+
Location type
Intronic
Target gene
BIVM
miRNAs that regulate target gene
hsa-mir-340-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-324-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-431-5p ; hsa-mir-6799-3p ; hsa-mir-146b-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-924 ; hsa-mir-4524a-3p ; hsa-mir-339-5p ; hsa-mir-5007-5p ; hsa-mir-4797-5p
Nearest miRNA
hsa-mir-1297/Upstream/755878; hsa-mir-1267/Downstream/4729289;
Nearest TSS
ENST00000623511/Upstream/388; ENST00000474443/Downstream/5264;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1016, chr13-CpG: 54/Downstream/43868
Upstream sequence
ccacctggtaagacctgtgtgaggaaggtactagagtctgtaccgggtcacctggcctagtttgagaagccaagaaggtttcccccagaaagtgacattt
Downstream sequence
gagctgacattggaaagatgaatgggaatgagctaagtaagggagACAGTATTGGGAGAACCAAAAAGTAATGTGGAGCTTGGGGGGTGGGGGAAAGGAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate