Basic Information
VIS ID
TVIS44033156
Fusion event
HTLV-1-LOC105375751 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
NCBI36/hg18
Start
127977902/126896475 (Hg38)
End
127977902/126896475 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
LOC105375751
Nearest miRNA
hsa-mir-12123/Upstream/2074417; hsa-mir-10400/Downstream/899487;
Nearest TSS
ENST00000518652/Upstream/18003; ENST00000644570/Downstream/30802;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/337950, chr8-CpG: 29/Downstream/419167
Upstream sequence
ATGCACACACATACACAtacttctctgacctcgtcttccaacactcacaccctttcctactctgttttagctacattggcatccatgcaatgtcagaaac
Downstream sequence
tttctcagaatgtccttacctcagggaagtttacttgcctttcccactgtccggaggacccttcacccatgatcaaatgcattcatccattcatatgcaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate