VISDB Viral Integration Site DataBase

VIS ID

TVIS44033172

Fusion event

HTLV-1-UGGT1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr2

Cytoband

q14.3

Reference genome

Start

End

128591153/128117109 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-1254 ; hsa-mir-615-3p ; hsa-let-7e-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4257 ; hsa-mir-370-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-3974 ; hsa-mir-550b-2-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-4252 ; hsa-mir-5186 ; hsa-mir-4793-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4293 ; hsa-mir-6777-3p ; hsa-mir-508-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-7977 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-219a-2-3p ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-5698 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-564 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4695-3p ; hsa-mir-6787-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-5693 ; hsa-mir-6736-3p ; hsa-mir-7641 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-6513-3p ; hsa-mir-8062 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-6765-3p ; hsa-mir-452-5p ; hsa-mir-4676-3p ; hsa-mir-4738-3p ; hsa-mir-4775 ; hsa-mir-548g-3p ; hsa-mir-590-3p ; hsa-mir-892c-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/693491; hsa-mir-10b/Downstream/3374051;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/25473, chr2-CpG: 79/Downstream/115826

Upstream sequence

GTCTGAGCAAAAATGCGAAATAGATATAGTAAATTTTATACATGCTCAATGGGAAAAACATTTTATTAttattttttatttatttatttattttttttga

Downstream sequence

gacagagtcttgctcttttgcccaggctggagtgcagtggtgcaatctcagttcactgcaacctccgtctcctgggttcaagtgattctcctgcctcagc