Basic Information
VIS ID
TVIS44033199
Fusion event
HTLV-1-DNAJC17 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
NCBI36/hg18
Start
38881680/40802190 (Hg38)
End
38881680/40802190 (Hg38)
Orient
+
Location type
Intronic
Target gene
DNAJC17
Nearest miRNA
hsa-mir-1233-1/Upstream/3829289; hsa-mir-10393/Downstream/889395;
Nearest TSS
ENST00000557528/Upstream/21623; ENST00000563530/Downstream/4896;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/37601, chr15-CpG: 54/Downstream/4855
Upstream sequence
aatggatggatggtggtgccacaagatggggaaatccaaggaaggagcaggtttggagagagaattgaaagagttcaatttttttttttttttttttcga
Downstream sequence
gacagattctagctccgtcacccaggctggagtgcagtggcttgatctcagctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate