Basic Information
VIS ID
TVIS44033203
Fusion event
HTLV-1-SAMD3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
130605153/130242315 (Hg38)
End
130605153/130242315 (Hg38)
Orient
-
Location type
Intronic
Target gene
SAMD3
miRNAs that regulate target gene
hsa-mir-192-5p
Nearest miRNA
hsa-mir-10398/Upstream/3757602; hsa-mir-1202/Downstream/1549857;
Nearest TSS
ENST00000381078/Upstream/19361; ENST00000617887/Downstream/43930;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/221010, chr6-CpG: 134/Downstream/122954
Upstream sequence
aaagggccaaagaataaatattttaggttttgttggctagacagtgtctgtctcagccactcaactctgctattgtagtacaaacactgtcatagataat
Downstream sequence
atgtcaataagtgagtgtggatgtgtttgaataaaactttatttacaaaaacaggcagtaggccagatttggcccactggcagtagtttgccaatccctA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate