Basic Information
VIS ID
TVIS44033241
Fusion event
HTLV-1-LINC01499 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
NCBI36/hg18
Start
41782043/41803917 (Hg38)
End
41782043/41803917 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01499
Nearest miRNA
hsa-mir-1343/Upstream/5793713; hsa-let-7a-2/Downstream/1755739;
Nearest TSS
ENST00000527297/Upstream/83474; ENST00000532199/Downstream/52003;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/5293450, chr11-CpG: 49/Downstream/1507972
Upstream sequence
GATTGAGGATCTCCCAAGACAACTAATGTATTCAGGGAGTAGCTGAAGCTTATGATTTTTAATTCCAGTTTTTTCTAATCAGATTGTTTTTCCCAGTTCA
Downstream sequence
TACCTTATCCTTGGTGTCAAATCTCAAAAATTAGAGAAAAGGGAACGAGCAATCATCATCTCTCCAATACTTTGTACCATCAGGAAGCCAACAAATATGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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