Basic Information
VIS ID
TVIS44033248
Fusion event
HTLV-1-LINC01965 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
NCBI36/hg18
Start
103881337/103898447 (Hg38)
End
103881337/103898447 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01965
Nearest miRNA
hsa-mir-1285-2/Upstream/1466081; hsa-mir-10b/Downstream/5243043;
Nearest TSS
ENST00000437798/Upstream/18238; ENST00000609391/Downstream/153435;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1161492, chr2-CpG: 44/Downstream/760683
Upstream sequence
TTAAACTAACACATTGTAAATAGGTAAAGTAGAAAGAGAAAGAAGGAGGAGTCTGGGGAGAGAGGGAGAATCATTAAGTTCAGGAACAAAAGATGCATGT
Downstream sequence
ATATTATCAAGTGTTACAATTGCAATATTTCATATAAACTAATGAGGAAAATAACCATTGTAAAGGAGAGaaaatttttttattatttataaaCATTTTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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