Basic Information
VIS ID
TVIS44033249
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
NCBI36/hg18
Start
232803649/234601280 (Hg38)
End
232803649/234601280 (Hg38)
Orient
-
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/294741; hsa-mir-1537/Downstream/588754;
Nearest TSS
ENST00000473358/Upstream/35982; ENST00000436039/Downstream/5728;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/906, chr1-CpG: 329/Downstream/7250
Nearby gene
IRF2BP2(+2989) ;
Upstream sequence
GACAAGGCTGTGCCAAAGAAATGCTGATTTAGTCTGACCCAGACAATCTCTACTCCCACATGTCACTTCTCTGCAGAACTCTTACTAGTATGGCAAATAC
Downstream sequence
TTTAAAAATCATACAATAAAAGAAGGCAAAACCTCAGTAATTTGAGGTTCACTTTTAATAAACTCTTTCCATGCATTAAAATAAATTGAGGCCCTGAGCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate