Basic Information
VIS ID
TVIS44033263
Fusion event
HTLV-1-APBB1IP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
26854265/26525330 (Hg38)
End
26854265/26525330 (Hg38)
Orient
-
Location type
Intronic
Target gene
APBB1IP
Nearest miRNA
hsa-mir-1265/Upstream/2249549; hsa-mir-107/Downstream/1763928;
Nearest TSS
ENST00000439456/Upstream/86905; ENST00000493857/Downstream/36613;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/86267, chr10-CpG: 55/Downstream/41647
Upstream sequence
gtgatcatgccattgcactccagcctgggtgacagagtgagatctgtctaaaaaagaaaaaaagaaaGCTCAGAGTTCAGTCTTCTActtagcataaaaa
Downstream sequence
tacataatttgcttctttgggtcttgatttctgaaggctccaatgtcacgtaaaactttggttagatgaatttgtgttgcttttctcttgttactctctc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate