Basic Information
VIS ID
TVIS44033275
Fusion event
HTLV-1-LOC112268472 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
NCBI36/hg18
Start
184182527/183024380 (Hg38)
End
184182527/183024380 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112268472
Nearest miRNA
hsa-mir-12113/Upstream/855002; hsa-mir-3945/Downstream/1826633;
Nearest TSS
ENST00000502981/Upstream/106444; ENST00000508614/Downstream/51653;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/106247, chr4-CpG: 260/Downstream/73297
Upstream sequence
gtgcatacctactcagaaagtatgctcctacttgggaagctgaggtgggaggatcacttgaacctaggagttcgaagctgaagtgagctgtgatcgcacc
Downstream sequence
accgtgttccagactgggtgacagagtgagatcctgtctcaatttagaaaaaaaaaaaaagagagagaaaGAGAAAGAATACACCTAAATGCCAATTCAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate