Basic Information
VIS ID
TVIS44033279
Fusion event
HTLV-1-LOC105377407 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
NCBI36/hg18
Start
125251495/124110890 (Hg38)
End
125251495/124110890 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377407
Nearest miRNA
hsa-mir-12113/Upstream/9454036; hsa-mir-1305/Downstream/1396369;
Nearest TSS
ENST00000502981/Upstream/336626; ENST00000509444/Downstream/141154;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/604888, chr4-CpG: 64/Downstream/601635
Upstream sequence
AAATTATCTATAAATCCCCTCATATCATCACCCTCAATCCTGAGTTCTGGGGAAAAAAATCAGTTTACTTTCTCATTATTTGTATATAtagattggacca
Downstream sequence
tatgaaattgtcttccttgtagattaaaaataggtgaatatcagcaatttcatgtgtttcaaTGTAGCATTTTAATATTTGCATTTAAAAAATAAATACC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate