Basic Information
VIS ID
TVIS44033301
Fusion event
HTLV-1-A4GNT integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
139333872/138132340 (Hg38)
End
139333872/138132340 (Hg38)
Orient
+
Location type
Intronic
Target gene
A4GNT
Nearest miRNA
hsa-let-7g/Upstream/3694434; hsa-mir-1224/Downstream/13433536;
Nearest TSS
ENST00000440867/Upstream/16522; ENST00000468560/Downstream/47;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/16590, chr3-CpG: 36/Downstream/42228
Upstream sequence
GCTCTAACCAAGGAGAACACAGATCTCACGTCTTGGCAGGTCTATCTTTCAAATTACATATAACCCTTTTAGAAAATACAAAACAGTGAATCAGAGCCTA
Downstream sequence
ACTTCTAGCTGCAAATGCAGTTAACCAGTATTTGAGGTCTTAGAAATGACAAGTTCTTCCTGCTACACTTTCTGATAAATCACCACCCAATCTTCCAACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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