Basic Information
VIS ID
TVIS44033316
Fusion event
HTLV-1-ZNF112 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr19
Cytoband
q13.31
Reference genome
NCBI36/hg18
Start
49548426/44352434 (Hg38)
End
49548426/44352434 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF112
Nearest miRNA
hsa-mir-10395/Upstream/2001229; hsa-let-7e/Downstream/301252;
Nearest TSS
ENST00000633603/Upstream/47388; ENST00000592507/Downstream/4240;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/47358, chr19-CpG: 21/Downstream/4071
Upstream sequence
gaagcagaaaaagcatttgacaaaatacaacatccactcatgacagaacttttgcagactaaaaatataatggaacttataaaaatgctttcccctatga
Downstream sequence
tcaggaacaaggcagagatgtgtactcttgacataactattcaacactgtactgaaaatcagccagtgtagtgaggcaaggaaaagaaataaaaagcata
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate