Basic Information
VIS ID
TVIS44033334
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
114419856/114075711 (Hg38)
End
114419856/114075711 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/1193582; hsa-mir-1182/Downstream/2484313;
Nearest TSS
ENST00000473358/Upstream/95211; ENST00000468191/Downstream/76729;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/145434, chr1-CpG: 145/Downstream/76803
Upstream sequence
GGGCTCTCTTTTTGGCCTGCCCTACCTACTGAGGACTCATTGGAGGAGCCCTCACAGGGAACTTTTCTTAAATTGACACCCTCTGTTTATTTTTGAACCC
Downstream sequence
CTAATTACCCTTTAAACTTGCTGTGGCTTATTTTTAGAGGTTTCTCATCCATCTCATTAACAGCTCGTAAAAGCTCCTGTCTCATATTTCTACCATTTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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