Basic Information
VIS ID
TVIS44033338
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
121053551/121610230 (Hg38)
End
121053551/121610230 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-1/Upstream/4515502; hsa-mir-1182/Downstream/24240357;
Nearest TSS
ENST00000473358/Upstream/29706; ENST00000443018/Downstream/21890282;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/90503, chr1-CpG: 312/Downstream/3475279
Upstream sequence
caacatcacaaagaagtttctgagaatgcttctgtttagttaagtgaggtttatcccgtttccaatgaaatcctcagagaagtccaaatatccacttgca
Downstream sequence
tattctaaaaaaagtgtgtttcgaaactgctccatcaaaaggaatgctcagctctgtgagttaaactcaatcatcacaaagaattttctgagaatgcatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate