Basic Information
VIS ID
TVIS44033377
Fusion event
HTLV-1-LOC105376107 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
NCBI36/hg18
Start
83881418/82076683 (Hg38)
End
83881418/82076683 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376107
Nearest miRNA
hsa-mir-101-2/Upstream/11266599; hsa-let-7a-1/Downstream/1893065;
Nearest TSS
ENST00000422679/Upstream/87895; ENST00000436084/Downstream/328505;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/386597, chr9-CpG: 137/Downstream/985417
Upstream sequence
ACCTCAAAATATTCATTGCTTTGACTAAATATGAAATATTCCCCCTCCAAACCCTTTCTCCAGATTTGTGTGTCTGAAAGAGCTGAGGTGAAATAGAGAT
Downstream sequence
GGTGCACAATAGCTCAGAAGTAAATTAATGAGTAAAAGAGTATACTCTGAATTCACAAGAAAATGAGAAAAATTCCATGTACTCACCTTCTTGTCCCTCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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