Basic Information
VIS ID
TVIS44033385
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
NCBI36/hg18
Start
98222380/97984236 (Hg38)
End
98222380/97984236 (Hg38)
Orient
-
Fragile sites / regions
FRA1M
Nearest miRNA
hsa-mir-101-1/Upstream/3440457; hsa-mir-11399/Downstream/61006;
Nearest TSS
ENST00000473358/Upstream/15422; ENST00000418344/Downstream/10764;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/63068, chr1-CpG: 67/Downstream/61174
Nearby gene
MIR137HG(+3764) ;
Upstream sequence
CTTTGATTATTCTTCAAACTCAGCTTGTGCAAGACCACTGTCTTTAAGAGCTGTCTTCTGGACAACTCTCAGTTTCATGGCATCCTATGAAGTCCCTACC
Downstream sequence
ACCTGCTTAAGAAACTTCAAGCTTTGTCTCATACTGTCTAAGCTGATTTTTTTTCATATTTCTTTGCTCAGTTCCTTTAGATGGACCTTACACTTGGATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate