Basic Information
VIS ID
TVIS44033389
Fusion event
HTLV-1-CCDC151 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
NCBI36/hg18
Start
11393706/11422038 (Hg38)
End
11393706/11422038 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
CCDC151
miRNAs that regulate target gene
hsa-mir-10a-5p
Nearest miRNA
hsa-mir-1181/Upstream/308504; hsa-let-7e/Downstream/73506;
Nearest TSS
ENST00000633603/Upstream/2696; ENST00000591946/Downstream/12861;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1116, chr19-CpG: 36/Downstream/492
Upstream sequence
CCCACCTGCAGGGTCGATCCTAGCCATTGGGGGCGGGGACTTAGGTCAAGGCCACGTCTGTGATGGGGGAGCCTCTGAACTCTAACTCTATATGTAAAGG
Downstream sequence
TTTCGGGGAGGCCTCTTGGGAACAGTAAGGATTCGAGGGAGGCCATTGTGGGATGGCCTCCTGAAGAAATGGCCCTCTGCTGCGGGCAGGATAGGTCTTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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