VISDB Viral Integration Site DataBase

VIS ID

TVIS44033400

Fusion event

HTLV-1-HEYL integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

p34.2

Reference genome

Start

End

39862063/39623804 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-93-3p ; hsa-mir-765 ; hsa-mir-6081 ; hsa-mir-4722-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-4768-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-4733-5p ; hsa-mir-6838-5p ; hsa-mir-6165 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-4291 ; hsa-mir-668-5p ; hsa-mir-6787-3p ; hsa-mir-339-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-922 ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6716-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-7160-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-6783-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-2276-3p ; hsa-mir-7641 ; hsa-mir-4279 ; hsa-mir-642a-5p ; hsa-mir-4436b-5p ; hsa-mir-4695-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-5092 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-4693-5p ; hsa-mir-4699-3p ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-6892-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-6880-3p ; hsa-mir-4485-5p ; hsa-mir-335-5p ; hsa-mir-5698 ; hsa-mir-6818-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-3655 ; hsa-mir-1304-3p

Nearest miRNA

hsa-mir-12136/Upstream/1534475; hsa-mir-101-1/Downstream/1130551;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/46809, chr1-CpG: 80/Downstream/15534

Upstream sequence

ccaaggcctgagggtctgcagaactcagccatgcacagggtaggggaagagcattcttggcaaagggaacagcatatgcaaagtgctggaggtgggaaca

Downstream sequence

aggctggaatgtcgaggaaatgaaggaagggcaggtggcagaagctcagggagcaagtctgggactggcaagaaatgaggctggaaatgaggttgggacc