Basic Information
VIS ID
TVIS44033408
Fusion event
HTLV-1-C13orf42 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
NCBI36/hg18
Start
50631561/51159424 (Hg38)
End
50631561/51159424 (Hg38)
Orient
-
Location type
Intronic
Target gene
C13orf42
Nearest miRNA
hsa-mir-15a/Upstream/1110223; hsa-mir-1267/Downstream/189143;
Nearest TSS
ENST00000623511/Upstream/48215; ENST00000614264/Downstream/12798;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/248969, chr13-CpG: 86/Downstream/62557
Upstream sequence
ATTAAAAAAACAGATGTCAGGATGAGGACTAGGGAACAGTGTGGGGGATAGAATGACAAGAAAATAAAGAGGCTGATCAAGAGCAGTCTGAAACCTTTCC
Downstream sequence
TTGAGTCACTGAGCTTTTATGCTTCCCCCAGCCATGGGGAGAGACAGGCTTTTCCATTTCAGGAAAACATAGATTATAGAAAATATATAGATTAGAGTTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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