Basic Information
VIS ID
TVIS44033412
Fusion event
HTLV-1-LINC02734 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
NCBI36/hg18
Start
82173906/82785216 (Hg38)
End
82173906/82785216 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02734
Nearest miRNA
hsa-mir-10392/Upstream/894380; hsa-let-7a-2/Downstream/3493117;
Nearest TSS
ENST00000527297/Upstream/51352; ENST00000526305/Downstream/6446;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/51282, chr11-CpG: 28/Downstream/116244
Upstream sequence
actaaacatagaactaccatttgatctggcaatactactactgggtatttacccaagggaaaataaatcattatattaaaaagatgcctgcataggtatg
Downstream sequence
tttatctcagcactattcacaattgcaaagatatggaatcaacccaagtatccatcagtggatgattggatttttaaaatgtggtgtatatatatatgtg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate